PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016456690.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 378aa    MW: 42052.5 Da    PI: 6.5552
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016456690.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.9e-06156177223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C  Cgk F+r  nL+ H+r H
  XP_016456690.1 156 FCDFCGKGFKRDANLRMHMRAH 177
                     6*******************99 PP

2zf-C2H211.70.00082241264123
                     EEETTTT.EEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                     y+C+ C+ ksFs   +Lk+H++ +
  XP_016456690.1 241 YSCTRCNkKSFSVLADLKSHLKHC 264
                     99*******************977 PP

3zf-C2H211.80.00075272288521
                     TTTEEESSHHHHHHHHH CS
         zf-C2H2   5 dCgksFsrksnLkrHir 21 
                      Cg+sFsrk+ L  H+ 
  XP_016456690.1 272 SCGTSFSRKDKLFGHMA 288
                     5**************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.85E-6152178No hitNo description
SMARTSM003550.0024155177IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.7E-6155177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.092155182IPR007087Zinc finger, C2H2
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
SMARTSM00355150203236IPR015880Zinc finger, C2H2-like
SMARTSM0035514241263IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001263288IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355210269293IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MSFFGDLRHT PSQTKPPLTT MSAASTIGDD PRAPLLNLSA VQVRMDSLQK FLSDSINSNT  60
LLGQQQMNMV SDEITSAIHQ IIVNGAALLS SAQSPNHQPP PQSPELKMNP KSNHKRTFSE  120
FDGRGSEVEL LEEEDGDDWE IIELDAVELL AEHIHFCDFC GKGFKRDANL RMHMRAHGNQ  180
YKTPEALAKP DKCIESSSKN RRFSCPFVGC CRNKSHSKFR PLKSAICVKN HFKRSHCPKM  240
YSCTRCNKKS FSVLADLKSH LKHCGETKWK CSCGTSFSRK DKLFGHMALF EGHMPAIEPE  300
EEAKPPAAAA VEDDVEMDVS RGSDNGFLDI RTGSDNGFLD RLMLDGLESI DSYCFQDLLG  360
SSSPSGLNTV PDTNEWFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016456690.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ9C8N51e-83STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLG8Z2660.0G8Z266_SOLLC; Hop-interacting protein THI038
STRINGSolyc04g056320.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA100002126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.31e-70C2H2 family protein